Mar 022016
 

CUDA-MEME 2.74 / mCUDA-MEME 3.0.16

:: DESCRIPTION

CUDA-MEME is a motif discovery software based on MEME   algorithm for a single GPU device using CUDA programming model. At present, CUDA-MEME only supports the OOPS and ZOOPS models.

mCUDA-MEME is a further extension of CUDA-MEME based on MEME algorithm for mutliple GPUs using a hybrid combination of CUDA, MPI and OpenMP.

::DEVELOPER

Liu, Yongchao

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • CUDA toolkits and SDK 2.0 or higher.

:: DOWNLOAD

   CUDA-MEME / mCUDA-MEME

:: MORE INFORMATION

Citation:

Yongchao Liu, Bertil Schmidt, Weiguo Liu, Douglas L. Maskell:
CUDA-MEME: accelerating motif discovery in biological sequences using CUDA-enabled graphics processing units“.
Pattern Recognition Letters, 2010, 31(14): 2170 – 2177

Yongchao Liu, Bertil Schmidt, Douglas L. Maskell:
An ultrafast scalable many-core motif discovery algorithm for multiple GPUs“.
10th IEEE International Workshop on High Performance Computational Biology (HiCOMB 2011), 2011, 428-434

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