Aug 222013
 

CUDA-EC 1.02

:: DESCRIPTION

CUDA-EC is a scalable parallel algorithm for correcting sequencing errors in high-throughput short-read data so that error-free reads can be available before DNA fragment assembly.

::DEVELOPER

Haixiang Shi

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ compiler
  • NVIDIA CUDA SDK

:: DOWNLOAD

 CUDA-EC

:: MORE INFORMATION

Citation

J Comput Biol. 2010 Apr;17(4):603-15. doi: 10.1089/cmb.2009.0062.
A parallel algorithm for error correction in high-throughput short-read data on CUDA-enabled graphics hardware.
Shi H, Schmidt B, Liu W, Müller-Wittig W.

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