ct3d 0.1 / at3d 0.1
ct3d is a command-line tool for tracking cells in time series of 2D images or 3D image stacks. ct3d performs the basic cell tracking as a command line tool.
Visualization, exploration, and evalutation of the results can be done through the graphical user interface of at3d.
Hang Xiao and Axel Mosig, THE RUB BIOINFORMATICS GROUP
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Ct3d: tracking microglia motility in 3D using a novel cosegmentation approach.
Xiao H, Li Y, Du J, Mosig A.
Bioinformatics. 2011 Feb 15;27(4):564-71. doi: 10.1093/bioinformatics/btq691. Epub 2010 Dec 24.