Mar 082015
 

CSMinFinder

:: DESCRIPTION

CSMinFinder is a linear time algorithm for calculating a set of non-overlapping regions that maximizes the sum of similarities between the vector of focal epigenetic states and the vectors of raw epigenetic states at DNA positions in the set of regions.

::DEVELOPER

Morishita Laboratory, the University of Tokyo

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • C++ Compiler

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

A linear time algorithm for detecting long genomic regions enriched with a specific combination of epigenetic states.
Ichikawa K, Morishita S.
BMC Genomics. 2015;16 Suppl 2:S8. doi: 10.1186/1471-2164-16-S2-S8

31 views

Sorry, the comment form is closed at this time.