CSMinFinder is a linear time algorithm for calculating a set of non-overlapping regions that maximizes the sum of similarities between the vector of focal epigenetic states and the vectors of raw epigenetic states at DNA positions in the set of regions.
Morishita Laboratory, the University of Tokyo
- Linux / Windows
- C++ Compiler
:: MORE INFORMATION
A linear time algorithm for detecting long genomic regions enriched with a specific combination of epigenetic states.
Ichikawa K, Morishita S.
BMC Genomics. 2015;16 Suppl 2:S8. doi: 10.1186/1471-2164-16-S2-S8