Jun 062014
 

CSI-ANN

:: DESCRIPTION

CSI-ANN (chromatin signature identification by artificial neural network) allows the user to predict regulatory DNA elements using chromatin modification data. The user provides chromatin modification data (e.g., H3K4me1, H3K4me3, H3K27ac, etc), either ChIP-chip or ChIP-Seq, and the sotfware produces a text file containing the prediction centers of regulatory DNA elements (genomic positions) across the regions/genomes.

::DEVELOPER

Tan Lab, University of Iowa

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 CSI-ANN

:: MORE INFORMATION

Citation:

Bioinformatics. 2010 Jul 1;26(13):1579-86. doi: 10.1093/bioinformatics/btq248. Epub 2010 May 7.
Discover regulatory DNA elements using chromatin signatures and artificial neural network.
Firpi HA1, Ucar D, Tan K.

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