CROSS / CROSSalign / CROSSalive – Recognition of RNA Secondary Structure

CROSS / CROSSalign / CROSSalive


CROSS predicts the secondary structure propensity profile of an RNA molecule at single-nucleotide resolution. CROSS produces a table with the propensity scores and a graphical representation of the profile.


CROSSalign computes the similarity of RNA secondary structure

CROSSalive computes the structure of RNA molecules in vivo. Changes of structure upon N6-Methyladenosine methylation can be predicted.


Tartaglia Lab




  • Web Browser





CROSSalive: a web server for predicting the in vivo structure of RNA molecules.
Delli Ponti R, Armaos A, Vandelli A, Tartaglia GG.
Bioinformatics. 2019 Aug 28. pii: btz666. doi: 10.1093/bioinformatics/btz666.

Front Mol Biosci. 2018 Dec 3;5:111. doi: 10.3389/fmolb.2018.00111. eCollection 2018.
A Method for RNA Structure Prediction Shows Evidence for Structure in lncRNAs.
Delli Ponti R, Armaos A, Marti S, Tartaglia GG

A high-throughput approach to profile RNA structure.
Delli Ponti R, Marti S, Armaos A, Tartaglia GG.
Nucleic Acids Res. 2017 Mar 17;45(5):e35. doi: 10.1093/nar/gkw1094.

Leave a Reply

Your email address will not be published. Required fields are marked *

This site uses Akismet to reduce spam. Learn how your comment data is processed.