Nov 082013
 

CrmMiner

:: DESCRIPTION

CrmMiner is designed to mine for cis-regulatory modules (CRMs) in a large number of sequences. Hence, it has the potential to find CRMs thousands of nucleotides away from their target TSSs.

::DEVELOPER

Hani Zakaria Girgis, PhD

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl
  • Java

:: DOWNLOAD

  CrmMiner

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2012 Feb 7;13:25. doi: 10.1186/1471-2105-13-25.
Predicting tissue specific cis-regulatory modules in the human genome using pairs of co-occurring motifs.
Girgis HZ, Ovcharenko I.

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