Count is a software package for the evolutionary analysis of homolog family sizes (phylogenetic profiles), or other numerical census-type characters along a phylogeny. The principal data consist of the distribution of homolog family sizes across multiple genomes: for each (gene) family, that table gives the number of homologs identified in each genome.
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Bioinformatics. 2010 Aug 1;26(15):1910-2. doi: 10.1093/bioinformatics/btq315. Epub 2010 Jun 15.
Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood.