Nov 142013
 

CoreAligner

:: DESCRIPTION

CoreAligner is a software for identifying the core structure of related genomes, which is defined as a set of sufficiently long segments in which gene orders are conserved among multiple genomes so that they are likely to have been inherited mainly through vertical transfer. Using a dynamic programming based algorithm, CoreAligner finds the order of pre-identified orthologous groups (OGs) that retains to the greatest possible extent the conserved gene orders.

::DEVELOPER

Ikuo Uchiyama (uchiyama@nibb.ac.jp)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  •  Linux / Windows/ MacOsX
  • Perl

:: DOWNLOAD

 CoreAligner

:: MORE INFORMATION

Citation

I. Uchiyama (2008)
Multiple genome alignment for identifying the core structure among moderately related microbial genomes
BMC Genomics, 9:515.

80 views

Sorry, the comment form is closed at this time.