CopyMap is a hidden Markov algorithm to infer copy number variation from a sample of hybridization intensities. The program combines the information across individuals by estimating a transition matrix between every pair of markers using a Baum‐Welch algorithm. The algorithm consists of two steps, the first step estimates the underlying parameters, the second step estimates carrier status in each individual based on the estimated parameters
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CopyMap: localization and calling of copy number variation by joint analysis of hybridization data from multiple individuals.
Bioinformatics (Oxford, England) 2010;26(21):2776-7.