CopraRNA 2.0.3 – sRNA Target Prediction utilizing Homology

CopraRNA 2.0.3

:: DESCRIPTION

CopraRNA (Comparative Prediction Algorithm for sRNA Targets) is a tool for sRNA target prediction. It computes whole genome predictions by combination of distinct whole genome IntaRNA predictions. As input, CopraRNA requires at least 3 homologous sRNA sequences from 3 distinct organisms in FASTA format.

::DEVELOPER

Chair for Bioinformatics Freiburg

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

 CopraRNA 

:: MORE INFORMATION

Citation

Proc Natl Acad Sci U S A. 2013 Sep 10;110(37):E3487-96. doi: 10.1073/pnas.1303248110. Epub 2013 Aug 26.
Comparative genomics boosts target prediction for bacterial small RNAs.
Wright PR1, Richter AS, Papenfort K, Mann M, Vogel J, Hess WR, Backofen R, Georg J.