ContEst is a tool (and method) for estimating the amount of cross-sample contamination in next generation sequencing data. Using a Bayesian framework, contamination levels are estimated from array based genotypes and sequencing reads.
- Linux / Mac OsX / Windows
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Kristian Cibulskis, Aaron McKenna, Tim Fennel, Eric Banks, Mark DePristo and Gad Getz
ContEst: estimating cross-contamination of human samples in next-generation sequencing data
Bioinformatics (2011) 27 (18): 2601-2602.