Nov 192015
 

contamDE 1.0

:: DESCRIPTION

The R package ‘contamDE’ conducts differential expression (DE) analysis using high throughput next-generation RNA-seq read count data generated from contaminated tumor samples that are either matched or unmatched with normal samples, which estimates the proportion of pure tumor cells in each contaminated tumor sample, and provides tumor vs.

::DEVELOPER

Hong Zhang @Fudan University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • R

:: DOWNLOAD

 contamDE

:: MORE INFORMATION

Citation

contamDE: Differential expression analysis of RNA-seq data for contaminated tumor samples.
Shen Q, Hu J, Jiang N, Hu X, Luo Z, Zhang H.
Bioinformatics. 2015 Nov 9. pii: btv657.

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