ConceptGen is an open-source gene set enrichment testing and concept mapping tool. This web-based tool can be used both to identify biological gene sets (called concepts) enriched with differentially expressed genes (or any other user-identified gene list), and to explore networks of relationships among biological concepts from diverse biological sources. You can either upload a list of human Entrez Gene IDs or gene symbols with or without a background gene set, or query from among the pre-built concepts. You also have the option of using the compound converter tool to convert one or more compounds/metabolites to their associated enzymes for upload.
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Bioinformatics. 2010 Feb 15;26(4):456-63. doi: 10.1093/bioinformatics/btp683. Epub 2009 Dec 9.
ConceptGen: a gene set enrichment and gene set relation mapping tool.
Sartor MA1, Mahavisno V, Keshamouni VG, Cavalcoli J, Wright Z, Karnovsky A, Kuick R, Jagadish HV, Mirel B, Weymouth T, Athey B, Omenn GS.