May 252016
 

COHCAP 1.10.0

:: DESCRIPTION

COHCAP is an algorithm to analyze single-nucleotide resolution methylation data (Illumina 450k methylation array, targeted BS-Seq, etc.). It provides QC metrics, differential methylation for CpG Sites, differential methylation for CpG Islands, integration with gene expression data, and visualization of methylation values.

::DEVELOPER

Charles Warden <cwarden45 at gmail.com>

:: SCREENSHOTS

COHCAP

:: REQUIREMENTS

  • Windows/ Linux/MacOsX
  • JRE/ R

:: DOWNLOAD

 COHCAP

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2013 Jun;41(11):e117. doi: 10.1093/nar/gkt242
COHCAP: an integrative genomic pipeline for single-nucleotide resolution DNA methylation analysis.
Warden CD1, Lee H, Tompkins JD, Li X, Wang C, Riggs AD, Yu H, Jove R, Yuan YC.

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