Nov 062015
 

CoGAPS 2.4.0

:: DESCRIPTION

CoGAPS identifies overlapping coregulation between genes and improves inference of biological process activity. CoGAPS achieves this improvement by combining an MCMC matrix factorization algorithm (GAPS) with a threshold-independent statistic inferring activity on gene sets.

::DEVELOPER

Division of Biostatistics and Bioinformatics – Johns Hopkins University Oncology

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/Windows/MacOsX
  • R
  • BioConductor

:: DOWNLOAD

 CoGAPS

:: MORE INFORMATION

Citation:

Bioinformatics. 2010 Nov 1;26(21):2792-3. doi: 10.1093/bioinformatics/btq503. Epub 2010 Sep 1.
CoGAPS: an R/C++ package to identify patterns and biological process activity in transcriptomic data.
Fertig EJ1, Ding J, Favorov AV, Parmigiani G, Ochs MF.

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