Oct 132013
 

CoCoNUT

:: DESCRIPTION

CoCoNUT is a software tool for performing the following comparative genomics tasks:

  • Global alignment for two or multiple whole genomes.
  • Finding regions of high similarity (candidate regions of conserved synteny) among two or multiple genomes.
  • Comparison of a draft genomes (a draft genome is not a single string but is a set of strings called contigs) to finished or to other draft genome (the current version is limited to at most 2 draft genomes).
  • cDNA/EST mapping.
  • Repeat analysis and detection of large segmental duplications.

::DEVELOPER

Mohamed Ibrahim Abouelhoda

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX

:: DOWNLOAD

  CoCoNUT

:: MORE INFORMATION

Citation

Mohamed I. Abouelhoda, Stefan Kurtz, Enno Ohlebusch
CoCoNUT: an efficient system for the comparison and analysis of genomes
BMC Bioinformatics, 9:476, 2008.

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