CluePedia provides a holistic view on a pathway or process by investigating experimental and in silico data from different perspectives: gene interrelations revealed by correlation weights, miRNAs regulatory aspects, protein – protein interactions as well as the functional context, in conjunction with ClueGO. This review is helpful for defining new hypothesis and strategies that allow one more step in understanding complex processes.
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Bindea G, Galon J and Mlecnik B.
CluePedia Cytoscape plugin: pathway insights using integrated experimental and in silico data.
Bioinformatics. 2013 Mar 1;29(5):661-3.