CloneQC is a public resource for lightweight sequence verification. The software pipeline is built from standard components, adapted for the purpose of validating relatively short synthetic DNA sequences easily checked in a single pair of reads from forward and reverse sequencing primers.
Synthetic Biology Group (JHU)
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CLONEQC: lightweight sequence verification for synthetic biology.
Lee PA, Dymond JS, Scheifele LZ, Richardson SM, Foelber KJ, Boeke JD, Bader JS.
Nucleic Acids Res. 2010 May;38(8):2617-23. doi: 10.1093/nar/gkq093.