CistromeFinder is an application for checking binding sites around a given gene. It has the most comprehensive collection of public ChIP/DNase-seq datasets in human and mouse (over 7,000 samples, including all of ENCODE, epigenome, and more published data from individual papers), which have all gone through a uniform QC and analysis pipeline.
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Sun H, Qin B, Liu T, Wang Q, Liu J, Wang J, Lin X, Yang Y, Taing L, Rao PK, Brown M, Zhang Y, Long HW, Liu XS.
CistromeFinder for ChIP-seq and DNase-seq data reuse.
Bioinformatics 2013 doi: 10.1093/bioinformatics/btt135