CISA has been developed to integrate the assemblies into a hybrid set of contigs, resulting in assemblies of superior contiguity and accuracy, compared with the assemblies generated by the state-of-the-art assemblers and the hybrid assemblies merged by existing tools.
- MUMmer 3.22 or higher
- Blast 2.2.25+ or higher
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PLoS One. 2013;8(3):e60843. doi: 10.1371/journal.pone.0060843. Epub 2013 Mar 28.
CISA: contig integrator for sequence assembly of bacterial genomes.
Lin SH1, Liao YC.