Jan 282016
 

Circlator 1.1.3

:: DESCRIPTION

Circlator is the first tool to automate assembly circularization and produce accurate linear representations of circular sequences.

::DEVELOPER

Parkhill Group (Pathogen Genomics), Wellcome Trust Sanger Institute

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /  MacOsX
  • Python
  • BWA version >= 0.7.12
  • prodigal version >= 2.6
  • SAMtools (version 0.1.9 or 1.2)
  • MUMmer version >= 3.23
  • SPAdes version 3.5.0, 3.6.0 or 3.6.2

:: DOWNLOAD

 Circlator

:: MORE INFORMATION

Citation

Circlator: automated circularization of genome assemblies using long sequencing reads.
Hunt M, Silva ND, Otto TD, Parkhill J, Keane JA, Harris SR.
Genome Biol. 2015 Dec 29;16(1):294. doi: 10.1186/s13059-015-0849-0.

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