CHROMOWAVE is a toolbox written for Matlab 7. It performs pre-processing and analysis of microarray data. Although it was designed for Affymetrix microarrays, its use can be extended to other microarray data. Code is optimized in regards to memory use and speed. Pre-processing tools include array normalization and data matrix manipulations. Analysis tools include analysis of variance (paired, group and ANOVA analyses, correlation analysis, gene-classifiers) with relative multiple hypothesis testing corrections (FWER, FDR etc), analysis of co-variance (singular value decomposition. For Affymetrix data only, CHROMOWAVE can perform chromosomal analysis
- Linux / Windows/ MacOsX
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Federico E Turkheimer et al.
Chromosomal patterns of gene expression from microarray data: methodology, validation and clinical relevance in gliomas
BMC Bioinformatics 2006, 7:526