Aug 182013
 

ChopSticks

:: DESCRIPTION

ChopSticks can generate high-resolution deletion calls of homozygous deletions using information independent of other methods, and it is therefore useful to examine the functional impact of SVs or to infer SV generation mechanisms.

::DEVELOPER

Tomohiro Yasuda  (tyasuda@hgc.jp)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/windows/MacOsX
  • C compiler

:: DOWNLOAD

 ChopSticks

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2012 Oct 30;13:279. doi: 10.1186/1471-2105-13-279.
ChopSticks: High-resolution analysis of homozygous deletions by exploiting concordant read pairs.
Yasuda T, Suzuki S, Nagasaki M, Miyano S.

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