Jun 062013
 

ChIA-PET 1.0

:: DESCRIPTION

ChIA-PET Tool  is a software package for automatic processing of ChIA-PET (Chromatin Interaction Analysis using Paired-End Tag sequencing )sequence data, including linker filtering, mapping tags to reference genomes, identifying protein binding sites and chromatin interactions, and displaying the results on a graphical genome browser

:: DEVELOPER

the Genome Institute of Singapore

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Apach
  • MySQL
  • PHP
  • Java
  • R package
  • C Compiler

:: DOWNLOAD

 ChIA-PET 

:: MORE INFORMATION

Citation

ChIA-PET analysis of transcriptional chromatin interactions.
Zhang J, Poh HM, Peh SQ, Sia YY, Li G, Mulawadi FH, Goh Y, Fullwood MJ, Sung WK, Ruan X, Ruan Y.
Methods. 2012 Nov;58(3):289-99.

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