Jul 022014
 

CHASM 3.0

:: DESCRIPTION

CHASM is a method that predicts the functional significance of somatic missense mutations observed in the genomes of cancer cells, allowing mutations to be prioritized in subsequent functional studies, based on the probability that they give the cells a selective survival advantage.

::DEVELOPER

Karchin Lab

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux
  • MySQL Server
  • Python module MySQLdb

:: DOWNLOAD

 CHASM

:: MORE INFORMATION

Citation

CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer.
Wong WC, Kim D, Carter H, Diekhans M, Ryan MC, Karchin R.
Bioinformatics. 2011 Aug 1;27(15):2147-8. doi: 10.1093/bioinformatics/btr357. Epub 2011 Jun 17.

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