CHANCE 2.0 b / CHANCE-HT 20140522
CHANCE (ChIP-seq Analytics and Confidence Estimation) is a software for assessing the quality of ChIP-seq experiments and providing feedback for the optimization of ChIP and library generation protocols.
CHANCE-HT is a ChIP-seq pre-processing software that filters samples with weak IP-strength, identifies heavily biased control experiments and under sequenced samples, detects batch effects, and normalizes large ensembles of ChIP-seq datasets.CHANCE-HT uses a parallel processing approach to normalize and filter large collections of ChIP-seq datasets in tandem.
- Windows /Linux/ MacOsX
:: MORE INFORMATION
A. Diaz, A. Nellore, J.S. Song.
CHANCE: a comprehensive software for quality control and validation of ChIP-seq data,
Genome Biology 13:R98, (2012).