Jan 262015
 

CHANCE 2.0 b / CHANCE-HT 20140522

:: DESCRIPTION

CHANCE (ChIP-seq Analytics and Confidence Estimation) is a software for assessing the quality of ChIP-seq experiments and providing feedback for the optimization of ChIP and library generation protocols.

CHANCE-HT is a ChIP-seq pre-processing software that filters samples with weak IP-strength, identifies heavily biased control experiments and under sequenced samples, detects batch effects, and normalizes large ensembles of ChIP-seq datasets.CHANCE-HT uses a parallel processing approach to normalize and filter large collections of ChIP-seq datasets in tandem.

::DEVELOPER

Diaz Lab , Jun S. Song’s Research Group

:: SCREENSHOTS

CHANCE

:: REQUIREMENTS

  • Windows /Linux/ MacOsX

:: DOWNLOAD

 CHANCE / CHANCE-HT

:: MORE INFORMATION

Citation

A. Diaz, A. Nellore, J.S. Song.
CHANCE: a comprehensive software for quality control and validation of ChIP-seq data,
Genome Biology 13:R98, (2012).

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