ChAMP 1.6.2 – Chip Analysis Methylation Pipeline for Illumina HumanMethylation450

ChAMP 1.6.2

:: DESCRIPTION

ChAMP includes quality control metrics, a selection of normalization methods and novel methods to identify differentially methylated regions and to highlight copy number aberrations.

::DEVELOPER

Tiffany Morris, PhD  <Tiffany.Morris at ucl.ac.uk>

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • R package
  • BioConductor

:: DOWNLOAD

  ChAMP

:: MORE INFORMATION

Citation

ChAMP: 450k Chip Analysis Methylation Pipeline.
Morris TJ, Butcher LM, Feber A, Teschendorff AE, Chakravarthy AR, Wojdacz TK, Beck S.
Bioinformatics. 2014 Feb 1;30(3):428-30. doi: 10.1093/bioinformatics/btt684.

Genome Biol. 2014 Feb 3;15(2):R30. [Epub ahead of print]
Using high-density DNA methylation arrays to profile copy number alterations.
Feber A, Guilhamon P, Lechner M, Fenton T, Wilson GA, Thirlwell C, Morris TJ, Flanagan AM, Teschendorff AE, Kelly JD, Beck S.