CGHweb is a tool that applies a number of popular algorithms to a single array CGH (comparative genomic hybridization) profile entered by the user. It generates a heatmap panel of the segmented profiles for each method as well as a consensus profile. The clickable heatmap can be moved along the chromosome and zoomed in or out. It also displays the time that each algorithm took and provides numerical values of the segmented profiles for download
- Linux / WIndows /MacOsX
- R package
:: MORE INFORMATION
Bioinformatics. 2008 Apr 1;24(7):1014-5. Epub 2008 Feb 22.
CGHweb: a tool for comparing DNA copy number segmentations from multiple algorithms.
Lai W, Choudhary V, Park PJ.