cdBEST is a tool/software developed in Perl to search the chromatin domain boundary element sequences in 12 Drosophila species. cdBEST uses recognition sequences of boundary interacting proteins and looks for ‘motif clusters’ under a set of constrains to predict boundary element sequences. Apart from Drosophila, cdBEST can be used in several other insect genomes, where the boundary interacting proteins are conserved.
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Nucleic Acids Res. 2012 May;40(10):4385-95. doi: 10.1093/nar/gks045. Epub 2012 Jan 28.
Chromatin domain boundary element search tool for Drosophila.
Srinivasan A1, Mishra RK.