May 042015
 

CCH 20141012

:: DESCRIPTION

CCH (Combinatorial Conflicting Homozygosity) uses dense Single Nucleotide Polymorphism (SNP) genotypes to identify regions of the genome inherited from a common ancestor among any or all subsets of a group. Analysis is rapid and can identify loci containing genes for dominant traits. CCH is robust to the presence of phenocopies and can detect undisclosed shared common ancestry.

::DEVELOPER

CCH team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux/ MacOsX
  • Python

:: DOWNLOAD

 CCH

:: MORE INFORMATION

Citation

Combinatorial Conflicting Homozygosity (CCH) analysis enables the rapid identification of shared genomic regions in the presence of multiple phenocopies.
Levine AP, Connor TM, Oygar DD, Neild GH, Segal AW, Maxwell PH, Gale DP.
BMC Genomics. 2015 Mar 10;16:163. doi: 10.1186/s12864-015-1360-4.

7 views

Sorry, the comment form is closed at this time.