CCBuilder is a web-based application that tackles the problem for a defined but large class of protein structure, the α-helical coiled coils.
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CCBuilder: an interactive web-based tool for building, designing and assessing coiled-coil protein assemblies.
Wood CW, Bruning M, Ibarra AA, Bartlett GJ, Thomson AR, Sessions RB, Brady RL, Woolfson DN.
Bioinformatics. 2014 Jul 26. pii: btu502.