CCAT is a software package for predicting genome-wide co-binding between biological regulators such as Transcription factors (TFs). The CCAT package also includes accompanying tools to cluster similar Position weight matrix (PWMs) of different TFs into clusters; and search PWMs on multiple genome alignments for conserved motif instances.
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Nucleic Acids Res. 2014 Mar;42(5):2833-47. doi: 10.1093/nar/gkt1302. Epub 2013 Dec 23.
CCAT: Combinatorial Code Analysis Tool for transcriptional regulation.
Jiang P1, Singh M.