Dec 182015
 

CASSIS / SMIPS 201511

:: DESCRIPTION

CASSIS (cluster assignment by islands of sites) is a tool to predict secondary metabolite (SM) gene clusters around a given anchor (or backbone) gene.

SMIPS (secondary metabolites by InterProScan) is a tool to predict secondary metabolite (SM) anchor genes, also called SM backbone genes, in protein sequences.

::DEVELOPER

CASSIS team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux
  • Perl

:: DOWNLOAD

 CASSIS / SMIPS

:: MORE INFORMATION

Citation

CASSIS and SMIPS: Promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes.
Wolf T, Shelest V, Nath N, Shelest E.
Bioinformatics. 2015 Dec 9. pii: btv713.

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