Nov 172014
 

CAP-miRSeq

:: DESCRIPTION

CAP-miRSeq is a comprehensive analysis pipeline for deep microRNA sequencing  that integrates read preprocessing, alignment, mature/precursor/novel miRNA qualification, variant detection in miRNA coding region, and flexible differential expression between experimental conditions.

::DEVELOPER

Bioinformatics Program, Division of Biomedical Statistics and Informatics, Mayo Clinic Research

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Virtual Box
  • R package

:: DOWNLOAD

   CAP-miRSeq

:: MORE INFORMATION

Citation

BMC Genomics. 2014 Jun 3;15:423. doi: 10.1186/1471-2164-15-423.
CAP-miRSeq: a comprehensive analysis pipeline for microRNA sequencing data.
Sun Z1, Evans J, Bhagwate A, Middha S, Bockol M, Yan H, Kocher JP.

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