CAGEr is an R implementation of novel methods for the analysis of differential TSS usage and promoter dynamics, integrated with CAGE data processing and promoterome mining into a first comprehensive CAGE toolbox on a common analysis platform.
- Windows/Linux/ MacOsX
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CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses.
Haberle V, Forrest AR, Hayashizaki Y, Carninci P, Lenhard B.
Nucleic Acids Res. 2015 Feb 4. pii: gkv054.