BYPASSR 1.0 / BYPASSR-DEGR 1.0.2
BYPASSR is the implementation of a new method for inferring branch lengths and site-specific substitution rates from nucleotide sequences. It makes use of the Bayesian Markov Chain Monte Carlo method and of the uniformization (randomization) technique to calculate sequence substitution probabilities in complicated DNA substitution models such as general time reversible model (GTR).
BYPASSRdegr is a software packages for estimating degradation levels of ancient DNA sequences
- Linux / Windows / MacOsX
- C/C++ Compiler
:: MORE INFORMATION
Syst Biol. 2006 Apr;55(2):259-69.
Inferring complex DNA substitution processes on phylogenies using uniformization and data augmentation.
Mateiu L, Rannala B.
Bayesian inference of errors in ancient DNA caused by postmortem degradation.
Mateiu LM, Rannala BH.
Mol Biol Evol. 2008 Jul;25(7):1503-11.