Mar 302016
 

bsmooth-align

:: DESCRIPTION

bsmooth-align (version 0.8.1). This integrates two different pipelines for aligning WGBS data.

bsseq (version 1.6.0). This is a R package used for smoothing methylation profiles and identifying DMRs.

bsseqData (version 0.8.0). This is an experiment data package for R, containing an example dataset used in the vignettes (chromosome 21 and 22 from 3 normal colon and 3 colon cancer patients).

::DEVELOPER

RafaLab, Hansen Lab

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • R
  • BioCOnductor

:: DOWNLOAD

 bsmooth-alignbsseq ,bsseqData

:: MORE INFORMATION

Citation

Genome Biol. 2012 Oct 3;13(10):R83.
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions.
Hansen KD1, Langmead B, Irizarry RA.

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