Aug 042013
 

BSG

:: DESCRIPTION

BSG is a collection of programs used to construct and analyze Binding Site Graphs. Overall,the analysis is a two step process that can be performed on separate computers. First, ensemble Gibbs sampling is performed, preferably on a massively parallel computer, and the results are collected. The resulting output files are then compressed (using gzip) to conserve disk space. Then, in a second step, the compressed output files are analyzed and predictions are made

::DEVELOPER

Bioinformatics and Evolution of Systems Laboratory

:: SCREENSHOTS

n/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 BSG

:: MORE INFORMATION

Citation

Timothy E Reddy, Charles DeLisi, Boris E Shakhnovich
Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites
PLoS Comput Biol 3(5): e90. doi:10.1371/journal.pcbi.0030090

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