BRAT 2 / BRAT-BW 2.0.1/ BRAT NextGen
BRAT contains an implementation of a Bayesian model-based method for detecting recombination events in bacterial populations using DNA sequence data.
BRAT-BW is a fast, accurate and memory-efficient tool that maps bisulfite-treated short reads (BS-seq) to a reference genome using the FM-index (Burrows-Wheeler transform).
BRAT NextGen is a software for Bayesian analysis of recombinations in whole-genome DNA sequence data
- Windows / MacOsX
:: MORE INFORMATION
Bioinformatics. 2012 Jul 1;28(13):1795-6. doi: 10.1093/bioinformatics/bts264. Epub 2012 May 3.
BRAT-BW: efficient and accurate mapping of bisulfite-treated reads.
Harris EY1, Ponts N, Le Roch KG, Lonardi S.
Marttinen, Pekka, Adam Baldwin, William P. Hanage, Chris Dowson, Esh Mahenthiralingam and Corander, Jukka, 2008,
Bayesian Modeling of Recombination Events in Bacterial Populations,
BMC Bioinformatics 9:421.