Sep 082015
 

BoulderALE 1.0.0

:: DESCRIPTION

BoulderALE (Boulder Alignment Editor) is an RNA alignment editor, which allows for the annotation of Watson-Crick and non-Watson-Crick basepairs, annotation of features (i.e. stems, loops, etc.), collapsing of features (horizontal) and sequences (vertical), along with 2D display of sequences (using VARNA ) and base composition given a secondary structure (using KiNG).

::DEVELOPER

Knight Lab

:: SCREENSHOT

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • Apache/ModPython
  • Python
  • Numpy
  • PyCogent
  • Kinemage Scripts

:: DOWNLOAD

 BoulderALE 

:: MORE INFORMATION

Citation

Bioinformatics. 2011 Jun 15;27(12):1706-7. doi: 10.1093/bioinformatics/btr258.
Boulder ALignment Editor (ALE): a web-based RNA alignment tool.
Stombaugh J, Widmann J, McDonald D, Knight R.

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