BLUP_GEN / BLUP_SNP
BLUP_GEN and BLUP_SNP are (Fortran90) programs to estimate solutions for genomic selection models, parameterized in terms of genomic relationship matrices or SNP effects. The programs accept heterogeneous variances as is often the case if pre-corrected phenotypes (DYD’s) are used
blup_snp computes solutions for snp effects considering them as random, with a common variance.
Blup_gen solves an equivalent system of equations based on G, the matrix of covariances among individuals.
Andrés Legarra , andres dot legarra at toulouse point inra punto fr , Anne Ricard, Olivier Filangi
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