BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented graph and a set of query sequences, it detects paths in the graph on which query sequences align at most at the given edit distance.
Guillaume Holley, Pierre Peterlongo
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Guillaume Holley, Pierre Peterlongo.
BlastGraph: intensive approximate pattern matching in string graphs and de-Bruijn graphs.
PSC 2012, Aug 2012, Prague, Czech Republic