BIPS (Biana Interolog Prediction Server) can predict putative interactions between proteins based on homologs found in Protein-Protein interaction databases. BIPS relies on data integrated in BIANA. You just need to insert your sequences of interest or list of protein identifiers, and BIPS will infer interactions based on homology. Predicted partners can be restricted to proteins added in your list or to the complete BIANA database.
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Nucleic Acids Res. 2012 Jul;40(Web Server issue):W147-51. Epub 2012 Jun 11.
BIPS: BIANA Interolog Prediction Server. A tool for protein-protein interaction inference.
Garcia-Garcia J, Schleker S, Klein-Seetharaman J, Oliva B.