Nov 122015
 

BioCham 3.7

:: DESCRIPTION

BioCham (Biochemical Abstract Machine) is a modelling environment for systems biology, with some unique features for inferring unknown model parameters from temporal logic constraints.
BioCham is mainly composed of :

  • a rule-based language for modeling biochemical systems (compatible with SBML)
  • several simulators (boolean, differential, stochastic),
  • a temporal logic based language to formalize the temporal properties of a biological system and validate models with respect to such specifications,
  • unique features for developing/correcting/completing/coupling models, including the inference of kinetic parameters in high dimension from temporal logic constraints.

::DEVELOPER

The “Contraintes” project-team

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

 BioCham

:: MORE INFORMATION

Citation

ioinformatics. 2006 Jul 15;22(14):1805-7. Epub 2006 May 3.
BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge.
Calzone L, Fages F, Soliman S.

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