Jun 242014
 

BicOverlapper 2.0

:: DESCRIPTION

BicOverlapper is a framework to support visual analysis of gene expression by means of biclustering.

BicOverlapper is a tool to visualize biclusters from gene-expression matrices in a way that helps to compare biclustering methods, to unravel trends and to highlight relevant genes and conditions. A visual approach can complement biological and statistical analysis and reduce the time spent by specialists interpreting the results of biclustering algorithms. The technique is based on a force-directed graph where biclusters are represented as flexible overlapped groups of genes and conditions.

::DEVELOPER

RODRIGO SANTAMARÍA at Department of Computer Sciences and Automation
University of Salamanca

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

BicOverlapper

:: MORE INFORMATION

Citation

BicOverlapper 2.0: visual analysis for gene expression.
Santamaría R, Therón R, Quintales L.
Bioinformatics. 2014 Jun 15;30(12):1785-6. doi: 10.1093/bioinformatics/btu120

Santamaría, R.; Therón, R. & Quintales, L.
BicOverlapper: A tool for bicluster visualization.
Bioinformatics, 2008, 24, 1212-1213

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