Jun 062015
 

BETA 1.0.7

:: DESCRIPTION

BETA is a software package that integrates ChIP-seq of transcription factors or chromatin regulators with differential gene expression data to infer direct target genes. BETA has three functions: (1) to predict whether the factor has activating or repressive function; (2) to infer the factor’s target genes; and (3) to identify the motif of the factor and its collaborators which might modulate the factor’s activating or repressive function.

::DEVELOPER

X. Shirley Liu Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python
  • GCC

:: DOWNLOAD

 BETA

:: MORE INFORMATION

Citation

Wang, S., Sun H, Ma J, Zang C, Wang C, Wang J, Tang Q, Meyer CA, Zhang Y, Liu XS.(2013)
Target analysis by integration of transcriptome and ChIP-seq data with BETA.
Nature protocols, 8(12), 2502-2515.

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