Dec 022013
 

BEAGLE 4

:: DESCRIPTION

BEAGLE is a state of the art software package for analysis of large-scale genetic data sets with hundreds of thousands of markers genotyped on thousands of samples. BEAGLE can

  • phase genotype data (i.e. infer haplotypes) for unrelated individuals, parent-offspring pairs, and parent-offspring trios.
  • infer sporadic missing genotype data.
  • impute ungenotyped markers that have been genotyped in a reference panel.
  • perform single marker and haplotypic association analysis.
  • detect genetic regions that are homozygous-by-descent in an individual or identical-by-descent in pairs of individuals.

::DEVELOPER

Brian L. Browning 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Java

:: DOWNLOAD

 BEAGLE

:: MORE INFORMATION

Citation:

B L Browning and S R Browning (2013)
Improving the accuracy and efficiency of identity by descent detection in population data.
Genetics 194(2):459-71. doi:10.1534/genetics.113.150029

B L Browning and S R Browning (2011)
A fast, powerful method for detecting identity by descent.
The American Journal of Human Genetics 88:173-182.

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