BeadArray is an R package for the analysis of Illumina BeadArray data. The package is able to analyse data from both SAM (arrays arranged in 96-well plates) or BeadChip (6 / 8 samples on a chip) technologies. Data can be read into the package as bead summary data pre-processed by the Illumina BeadStudio software. Alternatively, full bead-level data can be read using TIFF images and positional information about each bead on an array.
Computational Biology Group, Department of Oncology, University of Cambridge
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BeadArray expression analysis using bioconductor.
Ritchie ME, Dunning MJ, Smith ML, Shi W, Lynch AG.
PLoS Comput Biol. 2011 Dec;7(12):e1002276.