Apr 202014
 

BaobabLuna 1.1 beta

:: DESCRIPTION

BaobabLUNA is a java framework to deal with permutations that represent genomes in rearrangement analysis. baobabLUNA contains a collection of classes for building breakpoint graphs (the basic structures behind the work on genome rearrangements), performing reversals, calculating reversal distances, sorting permutations. Includes a text representation for the breakpoint graph.baobabLUNA is only able to deal with unichromosomal genomes and its main functionality is the implementation of an algorithm that gives a compact representation of the space of all solutions of the sorting by reversals problem, that is, a representation of all optimal sequences of reversals that sort one genome into another.

::DEVELOPER

Marília D. V. Braga

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/Windows/MacOsX
  • Java

:: DOWNLOAD

 BaobabLuna

:: MORE INFORMATION

Citation

Braga M. D. V.,
baobabLUNA: the solution space of sorting by reversals,
Bioinformatics, vol. 25, no. 14, 1833–1835, 2009.

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